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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40291690_40291965_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40291690 - 40291965
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACTGTA
5'SS Class:
major
3'SS Sequence:
GCATTTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTGGTGCATT
Flanking Amino Acid:
HGRKLKEISRMSDHWEAAPR
Intron Amino Acid Position:
2042

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
72.4
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.7
0.65
0.8
77
37
Minor 5ss
41.4
-1
3.2
49.3
47
Minor BPS
39.4
-0.7
2.7
63.83
47

Associated Gene:

Gene:
YLPM1
Ensembl Gene ID:
ENSAPLG00000002844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031518
40267176 - 40304438
37263
ENSAPLT00000002898
40267176 - 40304438
37263