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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40292050_40293430_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40292050 - 40293430
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAA
U12 Branch Point Sequence:
TGCTTTGTAACA
Flanking Amino Acid:
SLLQDAAIEEVEMEDFDANI
Intron Amino Acid Position:
2070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
53.5
0.09
1.4
67
39.8
Major PPT
73.2
0.52
1
68.9
40.8
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
53.7
0.11
2
66.82
40.3

Associated Gene:

Gene:
YLPM1
Ensembl Gene ID:
ENSAPLG00000002844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031518
40267176 - 40304438
37263
ENSAPLT00000002898
40267176 - 40304438
37263