Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40296641_40301890_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40296641 - 40301890

Intron Length:

5250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGGGTATT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGTTCTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

TCTCCTTTAACT

Flanking Amino Acid:

WEMDTSEAKLDKLDGLRTGT

Intron Amino Acid Position:

2116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

86.9

30.1

Major BPS

77.3

0.68

79.3

29.4

Major PPT

82.5

0.73

0.9

80.5

Minor 5ss

34.8

-1.7

3.2

50.1

46.4

Minor BPS

80.8

1.05

1.1

89.23

35.4

Associated Gene:

Gene:

YLPM1

Ensembl Gene ID:

ENSAPLG00000002844

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031518

40267176 - 40304438

37263

ENSAPLT00000002898

40267176 - 40304438

37263