Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40333512_40336219_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

40333512 - 40336219

Intron Length:

2708

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTTTCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

CCAGCTCTACTAG|A

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

TGTCTGTTGACC

Flanking Amino Acid:

RSLSGESYIFSPGDKNEAVP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

45.6

-0.2

1.3

49.2

41.8

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

59.1

0.21

0.9

51.4

37.8

Minor 5ss

86.1

1.22

1.3

24.4

Minor BPS

51.4

0.02

2.1

67.58

38.1

Associated Gene:

Gene:

DLST

Ensembl Gene ID:

ENSAPLG00000009194

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009640

40333464 - 40343536

10073