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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40336377_40336716_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40336377 - 40336716
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATGTCTGTCATT
Flanking Amino Acid:
VTEGDVRWEKAVGDTVAEDE
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.2
0.52
1
69.9
40.6
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
46.8
-0.1
2.3
69.26
42.8

Associated Gene:

Gene:
DLST
Ensembl Gene ID:
ENSAPLG00000009194
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009640
40333464 - 40343536
10073