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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40362009_40362450_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40362009 - 40362450
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAA
U12 Branch Point Sequence:
CTTCTCTCCACA
Flanking Amino Acid:
VLKVIREEYGRLRGRSEESD
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
49.7
-0
1.3
43.1
41.8
Major PPT
81.3
0.71
0.7
76
26.2
Minor 5ss
25.8
-2.8
3.2
33.4
42.1
Minor BPS
48.6
-0.1
2
64.43
42.1

Associated Gene:

Gene:
EIF2B2
Ensembl Gene ID:
ENSAPLG00000010140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010572
40361576 - 40366138
4563