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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40362600_40363293_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40362600 - 40363293
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CCTTCCGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTTCCGTTACA
Flanking Amino Acid:
EAINELLIELEGTTDNIAMQ
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
78.5
0.64
0.8
71.6
32.9
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
50.3
0
2.3
66.85
45.6

Associated Gene:

Gene:
EIF2B2
Ensembl Gene ID:
ENSAPLG00000010140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010572
40361576 - 40366138
4563