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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40363726_40364407_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40363726 - 40364407
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CTAACACTAATT
Flanking Amino Acid:
IFAVMSRVNKVIIGTKTILA
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
48.1
-0
2
67.83
42.6

Associated Gene:

Gene:
EIF2B2
Ensembl Gene ID:
ENSAPLG00000010140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010572
40361576 - 40366138
4563