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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40364546_40365146_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40364546 - 40365146
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TTTCCCCTGACC
Flanking Amino Acid:
CAPMFKLSPQFPNEEDSFHK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
76.2
0.59
0.9
73.9
35.8
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
67.8
0.54
1.7
80.84
33.2

Associated Gene:

Gene:
EIF2B2
Ensembl Gene ID:
ENSAPLG00000010140
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010572
40361576 - 40366138
4563