About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40369409_40369605_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40369409 - 40369605
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTACTACTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GTTCCCTTACTA
Flanking Amino Acid:
VEEFIQEQVELVQTTGRARG
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.1
0.61
0.8
74.8
34.8
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
65.1
0.47
1.6
73.68
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010239
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010682
40367555 - 40379685
12131