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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40371038_40374063_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40371038 - 40374063
Intron Length:
3026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTTAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
EVTEEQRRILRCCYKNLKDL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
79.5
35.6
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
89.7
0.89
0.6
89.1
19.9
Minor 5ss
34.2
-1.8
2.7
45.2
42.4
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010239
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010682
40367555 - 40379685
12131