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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40374173_40375228_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40374173 - 40375228
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTTTCATTCACA
Flanking Amino Acid:
ERIRLEQLIADSYEKEAAEC
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79.1
0.66
0.9
72.8
36.5
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
61.9
0.37
2
77.59
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010239
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010682
40367555 - 40379685
12131