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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40377925_40378830_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
40377925 - 40378830
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AACTTGTAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.5
0.87
0.6
83.5
24.9
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
47.2
-0.1
2.3
66.52
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010239
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010682
40367555 - 40379685
12131