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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40402253_40402644_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40402253 - 40402644
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTCTTCTGAATT
Flanking Amino Acid:
GDEFTIAATDDNHIFAWGNG
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82.3
0.73
0.7
80.7
24.6
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
65.6
0.57
1.4
77.06
39.7

Associated Gene:

Gene:
NEK9
Ensembl Gene ID:
ENSAPLG00000010802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011286
40399344 - 40421381
22038