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Intron Name: Anas_platyrhynchos_platyrhynchos_5_40403494_40403873_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40403494 - 40403873

Intron Length:

380

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCGTTCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

TGGTCCTTCACC

Flanking Amino Acid:

QCTSGIINHDTYCEVPYATS

Intron Amino Acid Position:

578

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

77.1

31.3

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

75.8

0.58

0.9

72.6

37.5

Minor 5ss

35.4

-1.7

3.2

46.1

42.2

Minor BPS

68.6

0.57

1.8

75.04

41.5

Associated Gene:

Gene:

NEK9

Ensembl Gene ID:

ENSAPLG00000010802

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011286

40399344 - 40421381

22038