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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40404030_40404882_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40404030 - 40404882
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAACTC
5'SS Class:
major
3'SS Sequence:
TTCTTCCGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTTTCTCAGGA
Flanking Amino Acid:
SEEDHYTPQKVDVPKTLTIV
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
63.2
41.7
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
76.7
0.6
0.9
72.2
32.5
Minor 5ss
34.5
-1.8
3.6
50.3
46.3
Minor BPS
50.9
0.02
2
71.1
41.3

Associated Gene:

Gene:
NEK9
Ensembl Gene ID:
ENSAPLG00000010802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011286
40399344 - 40421381
22038