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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40406193_40407416_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40406193 - 40407416
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAC
U12 Branch Point Sequence:
GGATGCTTACCA
Flanking Amino Acid:
TVEKELYTWVNMQGGTKLHG
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
66.4
0.41
1.1
57.4
41.4
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
49.6
-0
2.1
61.84
43.8

Associated Gene:

Gene:
NEK9
Ensembl Gene ID:
ENSAPLG00000010802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011286
40399344 - 40421381
22038