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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40408749_40409673_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40408749 - 40409673
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGGA
5'SS Class:
major
3'SS Sequence:
TGTCCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
GTTTCCTAAAAT
Flanking Amino Acid:
LEQPILSKRRREMEEKVTLL
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
65.9
39.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
75.8
0.58
1
72.7
37.5
Minor 5ss
28.7
-2.4
3.5
38.6
46.4
Minor BPS
69.4
0.69
1.8
86.3
39.3

Associated Gene:

Gene:
NEK9
Ensembl Gene ID:
ENSAPLG00000010802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011286
40399344 - 40421381
22038