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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40411475_40414131_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40411475 - 40414131
Intron Length:
2657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
LNSEYSMAETLVGTPYYMSP
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
72.6
38.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
36.7
-1.5
2.9
50.4
39.3
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
NEK9
Ensembl Gene ID:
ENSAPLG00000010802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011286
40399344 - 40421381
22038