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Intron Name: Anas_platyrhynchos_platyrhynchos_5_40414238_40416000_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40414238 - 40416000

Intron Length:

1763

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAA

U12 Branch Point Sequence:

TGTGTTTGAACA

Flanking Amino Acid:

SCIHRAGILHRDIKTLNIFL

Intron Amino Acid Position:

175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.08

0.7

85.2

32.2

Major BPS

69.4

0.48

1.2

63.4

44.3

Major PPT

84.4

0.77

0.8

81.3

30.7

Minor 5ss

36.3

-1.6

3.3

48.7

47.5

Minor BPS

58.1

0.25

1.5

68.24

38.3

Associated Gene:

Gene:

NEK9

Ensembl Gene ID:

ENSAPLG00000010802

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011286

40399344 - 40421381

22038