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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40416072_40416953_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40416072 - 40416953
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTACCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTATTCCTACCT
Flanking Amino Acid:
RQKDKLFEEEMVLWYLFQIA
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
79
0.65
0.8
72.4
32.1
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
58
0.33
2
81.18
40.3

Associated Gene:

Gene:
NEK9
Ensembl Gene ID:
ENSAPLG00000010802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011286
40399344 - 40421381
22038