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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40417010_40419872_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40417010 - 40419872
Intron Length:
2863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATCC
5'SS Class:
major
3'SS Sequence:
CTCGTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTCTTTCTAACT
Flanking Amino Acid:
TLLIELEYCNGGNLYDKILR
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
67.4
32.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.4
0.51
1
64.7
40.2
Minor 5ss
33.9
-1.8
3
40.1
39.9
Minor BPS
60.5
0.41
1.7
76.65
40.1

Associated Gene:

Gene:
NEK9
Ensembl Gene ID:
ENSAPLG00000010802
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011286
40399344 - 40421381
22038