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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40427850_40431643_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40427850 - 40431643
Intron Length:
3794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
GGTTCAGTGACT
Flanking Amino Acid:
HGVEAKNYEEIAKVEKLKPL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
80.6
0.69
0.8
76.2
32.4
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
49.3
0.03
2.3
74.28
42.2

Associated Gene:

Gene:
TMED10
Ensembl Gene ID:
ENSAPLG00000020865
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018334
40426898 - 40439671
12774