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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40431718_40436222_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40431718 - 40436222
Intron Length:
4505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTATGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AATCCTTTCATT
Flanking Amino Acid:
EACFESKLPVGTGRMPDQLV
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.6
0.6
1
66.5
44.5
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
56.2
0.28
1.7
72.84
38.3

Associated Gene:

Gene:
TMED10
Ensembl Gene ID:
ENSAPLG00000020865
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018334
40426898 - 40439671
12774