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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40462446_40462869_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40462446 - 40462869
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TATAATCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTTATTATAATC
Flanking Amino Acid:
SSMGSPVNPQDFCSELAVSS
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
69.9
0.45
0.9
62.8
38.8
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
51.3
0.02
1.6
62.99
37

Associated Gene:

Gene:
FOS
Ensembl Gene ID:
ENSAPLG00000020281
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040172
40462152 - 40464106
1955