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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40463122_40463258_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40463122 - 40463258
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCGGCACTGACG
Flanking Amino Acid:
SIGRRGKVEQLSPEEEEKRR
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
65.9
40.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
69.6
0.44
0.9
65.5
36.1
Minor 5ss
24.4
-2.9
3.1
29.4
43.3
Minor BPS
41
-0.8
2
41.02
43.3

Associated Gene:

Gene:
FOS
Ensembl Gene ID:
ENSAPLG00000020281
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040172
40462152 - 40464106
1955