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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40509193_40511708_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40509193 - 40511708
Intron Length:
2516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTCTTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TGGCTCTGACCT
Flanking Amino Acid:
GKRPQPVKSELDEEEERRKR
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
75
0.62
1
65.3
41.5
Major PPT
78.3
0.64
0.9
72.2
37.8
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
48.9
-0
1.8
66.75
43.6

Associated Gene:

Gene:
JDP2
Ensembl Gene ID:
ENSAPLG00000011380
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011840
40508992 - 40512570
3579