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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40523668_40525302_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40523668 - 40525302
Intron Length:
1635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCGCACTCATTT
Flanking Amino Acid:
SSQSPPPSKQDSSDDMRKVQ
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
69.7
0.44
0.9
61.8
40
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
44
-0.3
1.9
58.53
44.6

Associated Gene:

Gene:
BATF
Ensembl Gene ID:
ENSAPLG00000024395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034652
40523602 - 40528397
4796