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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40539098_40539241_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
40539098 - 40539241
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCGGTGGCA
5'SS Class:
weak_major
3'SS Sequence:
GGAGCCGGCGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCGGCAT
U12 Branch Point Sequence:
GCCTCCAGGAGC
Flanking Amino Acid:
AGREGRAGPGPGGDERGPGV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.07
1.3
52.1
35.9
Major BPS
44.1
-0.3
1.5
48.7
45.1
Major PPT
40.3
-0.5
1.6
30.9
36.7
Minor 5ss
12
-4.4
3.6
11.5
28.4
Minor BPS
42.2
-0.6
2
48.03
41.8

Associated Gene:

Gene:
FLVCR2
Ensembl Gene ID:
ENSAPLG00000011656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012169
40538888 - 40565775
26888