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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40539132_40539256_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
40539132 - 40539256
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCCGGGCGA
5'SS Class:
major
3'SS Sequence:
CGGCGGGGACGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTCCAG
U12 Branch Point Sequence:
GCCTCCAGGAGC
Flanking Amino Acid:
WQGPGLGGRARGPGVAGEVR
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.3
48.8
39.7
Major BPS
41.5
-0.5
1.6
49.7
44
Major PPT
38.1
-0.6
1.6
23.5
36.3
Minor 5ss
14.3
-4.1
3.6
21
37.4
Minor BPS
42.2
-0.6
2
48.03
41.8

Associated Gene:

Gene:
FLVCR2
Ensembl Gene ID:
ENSAPLG00000011656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034385
40538865 - 40565775
26911