Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40551391_40551770_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

40551391 - 40551770

Intron Length:

380

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTCAGCTGA

5'SS Class:

major

3'SS Sequence:

TTGCGGTTCCAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

GAGCTCTGAGCT

Flanking Amino Acid:

MRQSHLCPLSLCP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.3

59.6

42.3

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

58.9

0.2

1.1

55.7

43.8

Minor 5ss

40.3

-1.1

2.9

47.6

42.4

Minor BPS

47.2

-0.1

1.7

60.45

42.5

Associated Gene:

Gene:

FLVCR2

Ensembl Gene ID:

ENSAPLG00000011656

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025978

40551382 - 40565775

14394