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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40551949_40552721_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40551949 - 40552721
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACAAA
U12 Branch Point Sequence:
CTGTTACAAACA
Flanking Amino Acid:
ATALFILVVIVFKEKPPYPP
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
56
0.15
1.3
65.4
38
Major PPT
76.6
0.6
1
72.8
42.2
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
43.2
-0.5
2.1
56.31
43

Associated Gene:

Gene:
FLVCR2
Ensembl Gene ID:
ENSAPLG00000011656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034385
40538865 - 40565775
26911
ENSAPLT00000025978
40551382 - 40565775
14394
ENSAPLT00000012169
40538888 - 40565775
26888
ENSAPLT00000047819
40538904 - 40565775
26872