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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40565202_40565608_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40565202 - 40565608
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACTGCCTTTACA
Flanking Amino Acid:
SFLLLGTIMTAFIKADLRRQ
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.9
0.58
0.9
68
37.5
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
61.8
0.37
1.8
69.42
42.7

Associated Gene:

Gene:
FLVCR2
Ensembl Gene ID:
ENSAPLG00000011656
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025978
40551382 - 40565775
14394
ENSAPLT00000012169
40538888 - 40565775
26888
ENSAPLT00000047819
40538904 - 40565775
26872
ENSAPLT00000034385
40538865 - 40565775
26911