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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40584549_40584867_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40584549 - 40584867
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
AACTGTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TGACTCTTGACA
Flanking Amino Acid:
RYISNPLLIDDFKFDVRLYV
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
71.4
0.48
1
66.8
43
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
65.4
0.48
1.2
69.3
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944