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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40598121_40600196_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40598121 - 40600196
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
YLKQEGRDTAALMANVEDLI
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
78
38.6
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
78.4
0.64
0.7
72
26.1
Minor 5ss
30.5
-2.2
2.5
34.7
40.9
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944