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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40610323_40611112_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40610323 - 40611112
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTGATTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTCTTATAAACT
Flanking Amino Acid:
SMLSDMFTLVGFVCQDPGQR
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79
0.65
0.9
72.3
37.7
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
52.9
0.17
1.9
73.22
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944