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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40611205_40614987_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40611205 - 40614987
Intron Length:
3783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ACGTCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGGTTTTTATTC
Flanking Amino Acid:
GRRNLYQKLQRPVSAQSQPA
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.3
0.59
0.9
69.6
36.1
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
50.2
-0
1.5
56.34
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944