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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40621745_40625796_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40621745 - 40625796
Intron Length:
4052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
GGGTATCTGACT
Flanking Amino Acid:
LQILQKNGNLSKVQARRAFS
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
72.2
0.5
0.9
64.8
36.5
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
46.5
-0.1
1.8
62.4
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944