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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40627711_40630306_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40627711 - 40630306
Intron Length:
2596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGCTTGTTCACA
Flanking Amino Acid:
LGKFIIYYNKETEQMVQKQS
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.4
28.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.3
0.62
0.9
71.4
38.4
Minor 5ss
30.6
-2.2
2.6
36.3
40.7
Minor BPS
47.1
-0.2
2.4
62.92
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944