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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40630408_40632895_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40630408 - 40632895
Intron Length:
2488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTCTCCTTATTG
Flanking Amino Acid:
EGFQNFITRASESELEEVLT
Intron Amino Acid Position:
712

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
77.8
0.63
0.8
73.3
30
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
60.8
0.2
1.7
62.57
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944