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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40636295_40650126_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40636295 - 40650126
Intron Length:
13832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTTTCTGATGT
Flanking Amino Acid:
PSHISLLTQQLTSLNLASGA
Intron Amino Acid Position:
996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.4
0.77
0.8
81.6
30.4
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
47.6
-0.1
2
67.64
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944