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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40650276_40677035_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40650276 - 40677035
Intron Length:
26760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TGGTGAAAGACT
Flanking Amino Acid:
HAADRRSSAVRAPESDRFAW
Intron Amino Acid Position:
1045

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
38
-0.8
2.3
57.89
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944