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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40677214_40685849_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40677214 - 40685849
Intron Length:
8636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
CTGTTTTTACCA
Flanking Amino Acid:
LLEQSQARHQALFANYSQSS
Intron Amino Acid Position:
1105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
68.8
43.8
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
79.3
0.66
0.9
73.7
40.5
Minor 5ss
39.1
-1.2
2.9
49.5
46.7
Minor BPS
57.8
0.24
1.6
65.7
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011877
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012413
40580155 - 40703098
122944