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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40720109_40721593_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40720109 - 40721593
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
AGTTTCTTACAG
Flanking Amino Acid:
ETVREWLLHRESNLGLEISI
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
75.5
34.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
32.4
-2
3.9
48.7
47.8
Minor BPS
52.8
-0
1.8
59.46
42.1

Associated Gene:

Gene:
TGFB3
Ensembl Gene ID:
ENSAPLG00000012199
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012719
40715910 - 40729419
13510