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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40774504_40775931_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40774504 - 40775931
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
TTTTGCCTATTT
Flanking Amino Acid:
DLAMQVAAPPSVQVNRVMTY
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
61.4
0.28
1
53
33.7
Major PPT
82.2
0.72
0.9
76.5
37.5
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
50.1
0.08
2.3
80.43
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012286
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012790
40772982 - 40777306
4325