Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40776427_40777195_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40776427 - 40777195

Intron Length:

769

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGACTT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTCTGGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

GTATGTTTAATC

Flanking Amino Acid:

VLAPEHELREDDVTWDWDHL

Intron Amino Acid Position:

138

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.6

33.8

Major BPS

81.8

0.79

1.1

34.5

Major PPT

74.7

0.56

0.9

73.1

31.8

Minor 5ss

32.5

-2

3.3

47.4

Minor BPS

0.29

1.7

67.59

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012286

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012790

40772982 - 40777306

4325