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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40799031_40815720_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
40799031 - 40815720
Intron Length:
16690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTGCTGTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
76.3
0.59
0.8
73.9
35.7
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
47.1
-0.1
2.4
74.65
43.4

Associated Gene:

Gene:
GPATCH2L
Ensembl Gene ID:
ENSAPLG00000012320
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012837
40798854 - 40845432
46579