About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40816392_40820695_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40816392 - 40820695
Intron Length:
4304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTGACTTAATG
Flanking Amino Acid:
KQGSDENMSEWHPSSEDAKT
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
73
31.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
88.7
0.87
0.6
88
21.8
Minor 5ss
35.3
-1.7
3.1
45.7
43.4
Minor BPS
59.6
0.16
1.7
63.84
44.5

Associated Gene:

Gene:
GPATCH2L
Ensembl Gene ID:
ENSAPLG00000012320
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037338
40814421 - 40845432
31012