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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40816392_40822175_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40816392 - 40822175
Intron Length:
5784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
ATTTTTTTAGTG
Flanking Amino Acid:
KQGSDENMSECETSSVCSSS
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
73
31.9
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
85.7
0.8
0.9
80.6
37
Minor 5ss
35.3
-1.7
3.1
45.7
43.4
Minor BPS
59.5
0.16
1.6
64.81
37.9

Associated Gene:

Gene:
GPATCH2L
Ensembl Gene ID:
ENSAPLG00000012320
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038136
40814421 - 40847342
32922
ENSAPLT00000031424
40814421 - 40845432
31012
ENSAPLT00000012837
40798854 - 40845432
46579