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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40820762_40822175_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40820762 - 40822175
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGGACT
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
ATTTTTTTAGTG
Flanking Amino Acid:
KQSLNPCICCFETSSVCSSS
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
66.9
37.8
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
85.7
0.8
0.9
80.6
37
Minor 5ss
32
-2.1
3.3
47
42.5
Minor BPS
59.5
0.16
1.6
64.81
37.9

Associated Gene:

Gene:
GPATCH2L
Ensembl Gene ID:
ENSAPLG00000012320
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037338
40814421 - 40845432
31012